Single-cell RNA-seq analysis pipeline in Python using scanpy. Doublet detection, quality control, normalisation, dimensionality reduction, clustering with automated resolution selection, marker-based ...

Single-cell technologies have revolutionized our ability to interrogate biological systems at unprecedented resolution, revealing complex cellular heterogeneity and dynamic processes that underlie ...

Spatially resolved omics analysis of tissue sample promises to transform biomedical research and diagnostic. In this talk, I will introduce a spatial clustering algorithm called BANKSY. BANKSY is a ...

At AACR 2024, we explored the poster hall to pick out the posters that would interest the BioTechniques reader and those we found delivered the most interesting or surprising findings. Get our ...

Spatially resolved transcriptomics (SRT) technologies, such as spatial transcriptomics (ST) (Ståhl et al., 2016), 10x Visium, and Slide-seqV2 (Stickels et al., 2021), can measure the transcript ...

Thank you for developing the excellent tool Pegasus. I am a beginner in single-cell genomics analysis and started with Seurat in R, later learned Scanpy in Python, but I find Pegasus more suitable for ...